PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G184700.1
Common NamePHAVU_002G184700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 430aa    MW: 47557.7 Da    PI: 8.6681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G184700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Phvul.002G184700.1 57 YVCEICNQGFQRDQNLQMHRRRH 79
                        9*********************9 PP

2zf-C2H216.72e-05134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C+k +  +s++k Hi+t+
  Phvul.002G184700.1 134 WVCDKCSKGYAVQSDFKAHIKTC 156
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-55679No hitNo description
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035521098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-5129154No hitNo description
SMARTSM0035554134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MLDNSASSGA PSSSDAAFAL SENGVANKRK RRPAGTPDPD AEVVSLSPTT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET QGQKKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCDKCS KGYAVQSDFK AHIKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACTVRQHRPE LQALQPACSS RTASSASPSS EANFSIAPPL QGLPLPKLAS ADQPATVLLT  240
SEIHNNKSTT SRNLELQLLP SSVISQEKRN TKENYGLKLS IGSCSNDKGN EERVCSEAHR  300
SPPERNNNVS DCSTLEVARL KKFAAEELKL AMAEKAYAEE ARKEAKRQIE IAELEFENAK  360
RIRKQAQSEL AKAEVLRKQA IKKISSTVLE ITCQSCKQQF QSSTLGVPSE ETSIVMSYMS  420
SATTEGEAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158819.10.0hypothetical protein PHAVU_002G184700g
SwissprotF4IPE31e-160IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLV7CN730.0V7CN73_PHAVU; Uncharacterized protein
STRINGGLYMA05G26780.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-143indeterminate(ID)-domain 14